---
name: mafft
version: 6.903
origin: biology/mafft
comment: Multiple alignment program for amino acid or nucleotide sequences
arch: freebsd:9:x86:64
www: http://mafft.cbrc.jp/alignment/software/
maintainer: cartwright@asu.edu
prefix: /usr/local
licenselogic: single
licenses: [BSD]
flatsize: 7104200
desc: "MAFFT offers a range of multiple alignment strategies, L-INS-i\n(accurate;
  recommended for <200 sequences), FFT-NS-i (standard speed and\naccuracy), FFT-NS-2
  (fast; recommended for >2,000 sequences), etc.\nAccording to BAliBASE and other
  benchmark tests, L-INS-i is one of the\nmost accurate methods currently available.\n\nMAFFT
  has been described:\n\nK. Katoh and H. Toh 2008 (Briefings in Bioinformatics 9:286-298)\nRecent
  developments in the MAFFT multiple sequence alignment program.\n\nK. Katoh, K. Misawa,
  K. Kuma and T. Miyata (Nucleic Acids Res. 30:\n3059-3066, 2002) MAFFT: a novel method
  for rapid multiple sequence\nalignment based on fast Fourier transform. \n\nWWW:
  http://mafft.cbrc.jp/alignment/software/\n"
deps:
  fasta3: {origin: biology/fasta3, version: 36.3.2}
categories: [biology]
files:
  /usr/local/bin/einsi: '-'
  /usr/local/bin/fftns: '-'
  /usr/local/bin/fftnsi: '-'
  /usr/local/bin/ginsi: '-'
  /usr/local/bin/linsi: '-'
  /usr/local/bin/mafft: 6b3418142481dc21f9bd91c21a0664c9e2eb4b5ee1fb3583743be7eec1704173
  /usr/local/bin/mafft-distance: '-'
  /usr/local/bin/mafft-einsi: '-'
  /usr/local/bin/mafft-fftns: '-'
  /usr/local/bin/mafft-fftnsi: '-'
  /usr/local/bin/mafft-ginsi: '-'
  /usr/local/bin/mafft-homologs.rb: 3738344f4687c55e995426099adfb99307a375461045a6c20f770eed820fde80
  /usr/local/bin/mafft-linsi: '-'
  /usr/local/bin/mafft-nwns: '-'
  /usr/local/bin/mafft-nwnsi: '-'
  /usr/local/bin/mafft-profile: '-'
  /usr/local/bin/mafft-qinsi: '-'
  /usr/local/bin/mafft-xinsi: '-'
  /usr/local/bin/nwns: '-'
  /usr/local/bin/nwnsi: '-'
  /usr/local/libexec/mafft/addsingle: e7974923e8623d8ad5adb698707d07ea11ce460c0f3571bf8a994b563373b22c
  /usr/local/libexec/mafft/contrafoldwrap: d51073d5150bb9a7878020f461f775ceb088c4f722a122090c3a94b2a931b8c7
  /usr/local/libexec/mafft/countlen: 61168fc4cabf3151a4600fbdec8f4a00f6852bdc71c71eec690211a6f5fd4778
  /usr/local/libexec/mafft/disttbfast: b7f70eee37624d8f0659f254abad329c8f65506ac4a5eb14ef24eb7a1c9ae5dc
  /usr/local/libexec/mafft/dndblast: 6ab74686b7ae877e0eb45c9db523a091f24fcd7393b72de1de54cdc79f2fda0b
  /usr/local/libexec/mafft/dndfast7: 7c1d1130e78fffd96caca0a6bfe3d6a8971fefb9fb6d641aac28ace32a0f6956
  /usr/local/libexec/mafft/dndpre: 97234718d81928f7534909e3bd3a62155ff52ae6c0444d7149646b8a4d7aebae
  /usr/local/libexec/mafft/dndpre2: 719102f2dc26dce27e362f2219c512dcb1fc38b75841c147cb659fcb196faa4f
  /usr/local/libexec/mafft/dvtditr: 28c07fd210dadceb17db9a258fbd1b4f5e99b0bf979e8905334c09bf75ddef4b
  /usr/local/libexec/mafft/f2cl: eb6c7a8b00087e086b131845f1f683ec2e9ccfcab21d15d8e82bc8ce9ae32b23
  /usr/local/libexec/mafft/getlag: 5d252a4c8b3b7705f06aaf7cd69ec7e3c63420f476b7ae61c28df158131d4604
  /usr/local/libexec/mafft/mafft-distance: 508c1660fa43c7a452ac9ab325dd2aff4ce1956abdf7fbdfda13f90205acae9e
  /usr/local/libexec/mafft/mafft-profile: fe45edbf24615f072d24716052e100f71dee49377336304e16a7b0f40b331d52
  /usr/local/libexec/mafft/makedirectionlist: 037e9d5efd3a001cafd3c6765e9b568075ad9101b12a8cd9dd7f13f477accc4d
  /usr/local/libexec/mafft/mccaskillwrap: c979e3e913d1495598dabd48dfc7b219303529bc3476f5bdd6be7ec4713ea1e0
  /usr/local/libexec/mafft/multi2hat3s: 5392af3667d9d5c2ecc9a47047187a2f8748c7a7b2199a37e2995962cd94c6a2
  /usr/local/libexec/mafft/pair2hat3s: 46096b391930b236b714e1f4de52644543806541994e59623d93b5b03fcd1032
  /usr/local/libexec/mafft/pairash: 08deb33977360b13a4ab359436f65bf6671449735084f6c78d0e2b900d4666a6
  /usr/local/libexec/mafft/pairlocalalign: 9f234d6a8d68ee7f35d10b918b712c7717e61320469ed191e9d1d8a40fb45d2d
  /usr/local/libexec/mafft/regtable2seq: 86b40825b7b12bfb5360ee904c55cee87fc43b5aa9f58c1e2183c832f7c2e8e2
  /usr/local/libexec/mafft/replaceu: b7bb8526d5544cadcc15441546d89b17bd34bab080dddd9211623c3dd612bb9f
  /usr/local/libexec/mafft/restoreu: ee120143334cb577317a0cb38f384c717a73754c00b8b2835be569b07486ab28
  /usr/local/libexec/mafft/rnatest: ea9cb0ca080ba252390cde80c785308b27f3c6c7151da6c5cf4aa48f52517549
  /usr/local/libexec/mafft/score: 9350eccea8ef26793fb47fb0707142dcf6cbd9d220830d74fc381b70ed79f6de
  /usr/local/libexec/mafft/seq2regtable: 390c3e4c4e2bd8f5fff9ea99354b1fc50500296c2ced4f82a19debbf1cb457ec
  /usr/local/libexec/mafft/setcore: 03ad50ade22459f23be746fc2765dda4986d29f6201e29184128bd23f02ddec8
  /usr/local/libexec/mafft/setdirection: 93e24bcfc1236f9edc14162677bb0384a5107f7120601bd9ec8610d6ca2358bc
  /usr/local/libexec/mafft/sextet5: fd6c951603c84843055b92a60606bb617c15bebb467a9b696bffda0b2b3e14bb
  /usr/local/libexec/mafft/splittbfast: eff7aa93c6cf2e2b95949c7bf2b91441c9381a35b66b3f4d1aa188fae50a784c
  /usr/local/libexec/mafft/tbfast: 364a11072d21519808ab9a501f91596d3411c3b01865a19601761281b32d72c0
  /usr/local/libexec/mafft/version: 8caafcde4f0bcf19cc94940b69acd7e10f0457c496f06ddcfd8719864fac3042
  /usr/local/man/man1/mafft-homologs.1.gz: 899cade747ea221ef164c237ff05b8d1c424f0fa5e69730e520769e51405b46a
  /usr/local/man/man1/mafft.1.gz: 2bf97a03b730abccbc81caa9a1cbdc932e937f5a7965cfbad3ed3d766576596a
  /usr/local/share/doc/mafft/license: 5b88dda69a361f21c241a3938c8b454d327c87137499acd963ffa13ad7f9426d
  /usr/local/share/doc/mafft/readme: bac16a72612404e8c1049203de0caecb171cf954494699da2122bcdbb77de7fe
  /usr/local/share/examples/mafft/sample: 97d4901a8527c41a413d5b94d293e649c796d71d762f2a77bab8fb7fe2281fe3
  /usr/local/share/examples/mafft/sample.dpparttree: 8d366ece2f3656ec1093a4fdbfff924c9d775c73cfe40bd3d0a4d41f1cc9b63b
  /usr/local/share/examples/mafft/sample.fftns2: 46a51edd887ca11f50741d7595abc7a6cad38004b6731a5abeba2b451a31ba20
  /usr/local/share/examples/mafft/sample.fftnsi: e76787b98214dbf14fd5441472118f469e24b1cbe4f24a878bf0d3e4019b4dc5
  /usr/local/share/examples/mafft/sample.gins1: 4d6ff021432cb3c9030fe062dee354d46753ec99d3c28915310e14827e22e5d4
  /usr/local/share/examples/mafft/sample.ginsi: 6139f33503da4d35a59c5ba50a5aa157c6286d0f29c40eecf2caef66798a32b9
  /usr/local/share/examples/mafft/sample.lins1: 7d456932ac53a52c7a4b659b393aa223a67b79dbc8184b932ce6e53762e33fea
  /usr/local/share/examples/mafft/sample.linsi: 25cba12579d2c7456490c1919161f1c39e175f96deba2755e913ed389bf4ab90
  /usr/local/share/examples/mafft/sample.parttree: ff6f0f876d00d259b5dbdc592e36966596e9c52f57ef6850180ae2bfd1e1cb0f
  /usr/local/share/examples/mafft/samplerna: b3055d4644e9a4de583149516f33ff85af0e9130e6e1ef6fb7508b24377e2c75
  /usr/local/share/examples/mafft/samplerna.qinsi: 2b18dc356f6d40282771ff7ef2ce559bf2cc910c2c123f6faf480261141a9988
  /usr/local/share/examples/mafft/samplerna.xinsi: 46bfe33613d45d4751e9a6451425932e79965e1d9c2c47385ca4359b528749a7
  /usr/local/share/licenses/mafft-6.903/BSD: 85e7a53b5e2d3e350e2d084fed2f94b7f63005f8e1168740e1e84aa9fa5d48ce
  /usr/local/share/licenses/mafft-6.903/LICENSE: d9cce0db43502eb1bd8fbef7e960cfaa43b5647186f7f7379923b336209fd77b
  /usr/local/share/licenses/mafft-6.903/catalog.mk: 255c6ca18a14716d02bd6f8e4e7c9e9d0add1ba49b647092f15abdacde2e28e4
directories:
  /usr/local/share/licenses/mafft-6.903/: n
  /usr/local/share/licenses/: y
  /usr/local/share/examples/mafft/: n
  /usr/local/share/doc/mafft/: n
  /usr/local/libexec/mafft/: n
scripts:
  post-install: |
    cd /usr/local
  pre-deinstall: |
    cd /usr/local
  post-deinstall: |
    cd /usr/local
