FindOpenBabel3.cmake is not fully functional (confusion between OpenBabel3_INCLUDE_DIR / OPENBABEL3_INCLUDE_DIR) The easiest way is to amend here. --- a/cmake/FindOpenBabel3.cmake +++ b/cmake/FindOpenBabel3.cmake @@ -26,6 +26,6 @@ set_target_properties(OpenBabel3 PROPERTIES IMPORTED_LOCATION "${OpenBabel3_LIBRARY}" IMPORTED_IMPLIB "${OpenBabel3_LIBRARY}" - INTERFACE_INCLUDE_DIRECTORIES "${OpenBabel3_INCLUDE_DIR}") + INTERFACE_INCLUDE_DIRECTORIES "${OpenBabel3_INCLUDE_DIR}/openbabel3") endif() endif()