Author: Michael R. Crusoe <crusoe@debian.org>
Description: Default to running Python 3
Forwarded: not-needed
--- a/Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
+++ b/Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import absolute_import, division, print_function, unicode_literals
--- a/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py
+++ b/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division, print_function, unicode_literals)
--- a/Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
+++ b/Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
+++ b/Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/DP_matrix.py
+++ b/Analysis/SuperTranscripts/pylib/DP_matrix.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
+++ b/Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/GraphCycleException.py
+++ b/Analysis/SuperTranscripts/pylib/GraphCycleException.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Node_alignment.py
+++ b/Analysis/SuperTranscripts/pylib/Node_alignment.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Node_path.py
+++ b/Analysis/SuperTranscripts/pylib/Node_path.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
+++ b/Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/TGLOBALS.py
+++ b/Analysis/SuperTranscripts/pylib/TGLOBALS.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 
 DEBUG = False
 
--- a/Analysis/SuperTranscripts/pylib/TGraph.py
+++ b/Analysis/SuperTranscripts/pylib/TGraph.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/TNode.py
+++ b/Analysis/SuperTranscripts/pylib/TNode.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Topological_sort.py
+++ b/Analysis/SuperTranscripts/pylib/Topological_sort.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
+++ b/Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/Analysis/SuperTranscripts/pylib/Trinity_util.py
+++ b/Analysis/SuperTranscripts/pylib/Trinity_util.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/PyLib/Pipeliner.py
+++ b/PyLib/Pipeliner.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/trinity-plugins/COLLECTL/util/collectl_dat_to_time_matrix.py
+++ b/trinity-plugins/COLLECTL/util/collectl_dat_to_time_matrix.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/trinity-plugins/DEXseq_util/dexseq_prepare_annotation.py
+++ b/trinity-plugins/DEXseq_util/dexseq_prepare_annotation.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 
 import sys, collections, itertools, os.path, optparse
 
--- a/util/misc/TPM_weighted_gene_length.py
+++ b/util/misc/TPM_weighted_gene_length.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 # encoding: utf-8
 
 from __future__ import (absolute_import, division,
--- a/util/support_scripts/trinity_installer.py
+++ b/util/support_scripts/trinity_installer.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 
 import os, re, sys, subprocess
 
--- a/util/misc/alt_GG_read_partitioning_JCornish/genwig2.py
+++ b/util/misc/alt_GG_read_partitioning_JCornish/genwig2.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
 import sys
 import re
 import numpy as np
--- a/Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py
+++ b/Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py
@@ -1,9 +1,6 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 # encoding: utf-8
 
-from __future__ import (absolute_import, division,
-                        print_function, unicode_literals)
-
 import os, sys, re
 import logging
 
